1LTX

Structure of Rab Escort Protein-1 in complex with Rab geranylgeranyl transferase and isoprenoid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.224

Literature

Macromolecules
Sequence Display for 1LTX

Classification: Transferase / Protein binding

Total Structure Weight: 175077.09

Macromolecule Entities
Molecule Chains Length Organism Details
RAB GERANYLGERANYLTRANSFERASE ALPHA SUBUNIT A 567 Rattus norvegicus EC#: 2.5.1.60 IUBMB
Gene Name(s): Rabggta Ggta
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT B 331 Rattus norvegicus EC#: 2.5.1.60 IUBMB
Gene Name(s): Rabggtb Ggtb
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Rab Escort Protein 1 R 650 Rattus norvegicus Mutation: Q231K, A473T, G483A
Gene Name(s): Chm Rep1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
AAAA P 4 synthetic

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAR
Query on FAR

P FARNESYL
C15 H26
JXBSHSBNOVLGHF-BUJBXKITSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

R CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.224
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 68.70 α = 90.00
b = 197.30 β = 112.80
c = 85.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-05-21
  • Released Date: 2003-05-21
  • Deposition author(s): Pylypenko, O., Rak, A., Reents, R., Niculae, A., Thoma, N.H., Waldmann, H., Schlichting, I., Goody, R.S., Alexandrov, K.

Revision History

  • 2008-04-28
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance