1LTM

ACCELERATED X-RAY STRUCTURE ELUCIDATION OF A 36 KDA MURAMIDASE/TRANSGLYCOSYLASE USING WARP

Structural Biology Knowledgebase: 1LTM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 1LTM

Classification: GLYCOSYLTRANSFERASE

Total Structure Weight: 36097.90

Macromolecule Entities
Molecule Chains Length Organism Details
36 KDA SOLUBLE LYTIC TRANSGLYCOSYLASE A 320 Escherichia coli EC#: 4.2.2.n1 IUBMB
Fragment: SOLUBLE ACTIVE DOMAIN OF MLTB
Gene Name(s): mltB b2701 JW2671
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BCN
Query on BCN

A BICINE
C6 H13 N O4
FSVCELGFZIQNCK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.186
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 58.33 α = 90.00
b = 67.88 β = 90.00
c = 98.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-09-26
  • Released Date: 1998-11-11
  • Deposition author(s): Van Asselt, E.J., Dijkstra, B.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4