1LRW

Crystal structure of methanol dehydrogenase from P. denitrificans


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 1LRW

Classification: OXIDOREDUCTASE

Total Structure Weight: 153295.20

Macromolecule Entities
Molecule Chains Length Organism Details
methanol dehydrogenase subunit 1 A, C 600 Paracoccus denitrificans EC#: 1.1.99.8 IUBMB
Mutation: A444G, T445D, A446R, E448N, R449A, A450S, A452L, V490A
Gene Name(s): moxF
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
methanol dehydrogenase subunit 2 B, D 83 Paracoccus denitrificans EC#: 1.1.99.8 IUBMB
Gene Name(s): moxI
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PQQ
Query on PQQ

A, C PYRROLOQUINOLINE QUINONE
C14 H6 N2 O8
MMXZSJMASHPLLR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, C CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.179
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 113.34 α = 90.00
b = 122.28 β = 90.00
c = 107.36 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-05-16
  • Released Date: 2003-08-12
  • Deposition author(s): Xia, Z.-X., Dai, W.-W., He, Y.-N., White, S.A., Mathews, F.S., Davidson, V.L.

Revision History

  • 2008-04-28
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance