1LP1

Protein Z in complex with an in vitro selected affibody

Structural Biology Knowledgebase: 1LP1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.224

Literature

Macromolecules
Sequence Display for 1LP1

Classification: IMMUNE SYSTEM

Total Structure Weight: 13504.26

Macromolecule Entities
Molecule Chains Length Organism Details
Affibody binding protein Z A 58 Staphylococcus aureus Fragment: In vitro selected binding protein
Immunoglobulin G binding protein A B 58 Staphylococcus aureus Fragment: RESIDUES 2-58
Mutation: A1V, G29A
Gene Name(s): spa
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.224
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 55.55 α = 90.00
b = 55.55 β = 90.00
c = 155.75 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-05-07
  • Released Date: 2003-03-18
  • Deposition author(s): Hogbom, M., Eklund, M., Nygren, P.A., Nordlund, P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4