1LNL

Structure of deoxygenated hemocyanin from Rapana thomasiana

Structural Biology Knowledgebase: 1LNL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.248

Literature

Macromolecules
Sequence Display for 1LNL

Classification: OXYGEN STORAGE / TRANSPORT

Total Structure Weight: 141609.73

Macromolecule Entities
Molecule Chains Length Organism Details
hemocyanin A, B, C 408 Rapana venosa Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, C N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CU
Query on CU

A, B, C COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.248
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 105.49 α = 90.00
b = 105.49 β = 90.00
c = 374.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-05-03
  • Released Date: 2003-06-03
  • Deposition author(s): Perbandt, M., Guthoehrlein, E.W., Rypniewski, W., Idakieva, K., Stoeva, S., Voelter, W., Genov, N., Betzel, C.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4