1LMH

Crystal Structure of S. aureus peptide deformylase

Structural Biology Knowledgebase: 1LMH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 1LMH

Classification: HYDROLASE

Total Structure Weight: 21046.62

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (S.aureus peptide deformylase) A 184 Staphylococcus aureus EC#: 3.5.1.88 IUBMB
Gene Name(s): def def1 pdf1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.180
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 94.13 α = 90.00
b = 121.87 β = 90.00
c = 47.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-05-01
  • Released Date: 2002-06-12
  • Deposition author(s): Baldwin, E.T., Harris, M.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4