1LLR

CHOLERA TOXIN B-PENTAMER WITH LIGAND BMSC-0012

Structural Biology Knowledgebase: 1LLR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.46 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.149

Literature

Macromolecules
Sequence Display for 1LLR

Classification: TOXIN

Total Structure Weight: 59838.20

Macromolecule Entities
Molecule Chains Length Organism Details
CHOLERA TOXIN B SUBUNIT D, E, F, G, H 103 Vibrio cholerae Gene Name(s): ctxB EN12_07055 ERS013160_03498 ERS013165_03981 ERS013197_06217 ERS013202_03762 ERS013206_03003 ERS013207_03244 ERS013212_03447
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FNG
Query on FNG

D, E, F, G, H 5-AMINOCARBONYL-3-NITROPHENYL-ALPHA-D-GALACTOPYRANOSE
C13 H16 N2 O9
BYSXBFJVGIOFBO-LNSPPBFMSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
LNQ
Query on LNQ

D, E, F, G, H 3-AMINO-4-{3-[2-(2-PROPOXY-ETHOXY)-ETHOXY]- PROPYLAMINO}-CYCLOBUT-3-ENE-1,2-DIONE
C14 H24 N2 O5
ZUVPNXOKAPTNLU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.46 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.149
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 102.39 α = 90.00
b = 65.96 β = 105.97
c = 78.15 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-04-30
  • Released Date: 2002-08-14
  • Deposition author(s): Merritt, E.A., Hol, W.G.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4