1LL2

Crystal Structure of Rabbit Muscle Glycogenin Complexed with UDP-glucose and Manganese

Structural Biology Knowledgebase: 1LL2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 1LL2

Classification: TRANSFERASE

Total Structure Weight: 38054.46

Macromolecule Entities
Molecule Chains Length Organism Details
GLYCOGENIN-1 A 333 Oryctolagus cuniculus EC#: 2.4.1.186 IUBMB
Gene Name(s): GYG1 Gene View GYG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UPG
Query on UPG

A URIDINE-5'-DIPHOSPHATE-GLUCOSE
URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE ESTER (Synonym)
C15 H24 N2 O17 P2
HSCJRCZFDFQWRP-JZMIEXBBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.194
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 57.89 α = 90.00
b = 106.88 β = 90.00
c = 122.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-04-26
  • Released Date: 2002-05-15
  • Deposition author(s): Gibbons, B.J., Roach, P.J., Hurley, T.D.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4