1LIJ

STRUCTURE OF T. GONDII ADENOSINE KINASE BOUND TO PRODRUG 2 7-IODOTUBERCIDIN AND AMP-PCP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 1LIJ

Classification: TRANSFERASE

Total Structure Weight: 39333.95

Macromolecule Entities
Molecule Chains Length Organism Details
adenosine kinase A 363 Toxoplasma gondii EC#: 2.7.1.20 IUBMB
Mutation: V126T, L150I, D153N, T242V, T246V, A327G
Gene Name(s): AK
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACP
Query on ACP

A PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE (Synonym)
C11 H18 N5 O12 P3
UFZTZBNSLXELAL-IOSLPCCCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
RPP
Query on RPP

A 2-RIBOFURANOSYL-3-IODO-2,3-DIHYDRO-1H-PYRAZOLO[3,4- D]PYRIMIDIN-4-YLAMINE
C10 H14 I N5 O4
IPMOTTQXPAXTMS-CKVFBBIQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.185
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 167.70 α = 90.00
b = 46.97 β = 90.00
c = 44.09 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-04-17
  • Released Date: 2002-05-15
  • Deposition author(s): Schumacher, M.A., Scott, D.M., Mathews, I.I., Ealick, S.E., Roos, D.S., Ullman, B., Brennan, R.G.
  • Previous versions: 1DH1

Revision History

  • Version 1_0: 2002-05-15

    Type: Initial release

  • Version 1_1: 2008-04-28

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance