1LHV

CRYSTAL STRUCTURE OF THE N-TERMINAL LG-DOMAIN OF SHBG IN COMPLEX WITH NORGESTREL


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.215

Literature

Macromolecules
Sequence Display for 1LHV

Classification: TRANSPORT PROTEIN

Total Structure Weight: 21450.86

Macromolecule Entities
Molecule Chains Length Organism Details
SEX HORMONE-BINDING GLOBULIN A 189 Homo sapiens Fragment: LG-like 1 domain, Residues 30-218
Gene Name(s): SHBG Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NOG
Query on NOG

A 13-BETA-ETHYL-17-ALPHA-ETHYNYL-17-BETA-HYDROXYGON- 4-EN-3-ONE
NORGESTREL (Synonym)
C21 H28 O2
WWYNJERNGUHSAO-XUDSTZEESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IPA
Query on IPA

A ISOPROPYL ALCOHOL
2-PROPANOL (Synonym)
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
NOG Kd: 1.2 nM (100) BindingDB

N/A in BindingMoad
Kd: 1.23 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.215
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 103.98 α = 90.00
b = 103.98 β = 90.00
c = 83.93 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-04-17
  • Released Date: 2002-10-23
  • Deposition author(s): Grishkovskaya, I., Avvakumov, G.V., Hammond, G.L., Catalano, M.G., Muller, Y.A.

Revision History

  • 2008-04-28
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance