1LHE

HUMAN ALPHA-THROMBIN COMPLEXED WITH AC-(D)PHE-PRO-BORO-N-BUTYL-AMIDINO-GLYCINE-OH

Structural Biology Knowledgebase: 1LHE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Observed: 0.197

Literature

Macromolecules
Sequence Display for 1LHE

Classification: COMPLEX (SERINE PROTEASE / INHIBITOR)

Total Structure Weight: 35804.88

Macromolecule Entities
Molecule Chains Length Organism Details
ALPHA-THROMBIN L 36 Homo sapiens EC#: 3.4.21.5 IUBMB
Gene Name(s): F2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ALPHA-THROMBIN H 259 Homo sapiens EC#: 3.4.21.5 IUBMB
Gene Name(s): F2 Gene View
HIRUDIN I 12 Hirudo medicinalis Fragment: RESIDUES 54 - 65

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DI3
Query on DI3

H AC-(D)PHE-PRO-BORO-N-BUTYL-AMIDINO-GLYCINE- OH
C22 H34 B N5 O5
HRJAZDKYNLOJRB-QYZOEREBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DI3 N/A in BindingDB
N/A in BindingMoad
Ki: 0.29 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Observed: 0.197
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 70.80 α = 90.00
b = 72.40 β = 100.30
c = 72.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1994-12-27
  • Released Date: 1996-11-08
  • Deposition author(s): Weber, P.C., Lee, S.L., Lewandowski, F.A., Schadt, M.C., Chang, C.H., Kettner, C.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4