1LGN

DECAMERIC DAMP COMPLEX OF HUMAN SERUM AMYLOID P COMPONENT


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.232

Literature

Macromolecules
Sequence Display for 1LGN

Classification: SERUM PROTEIN

Total Structure Weight: 118469.16

Macromolecule Entities
Molecule Chains Length Organism Details
SERUM AMYLOID P COMPONENT A, B, C, D, E 204 Homo sapiens Gene Name(s): APCS Gene View PTX2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DA
Query on DA

A, B, C, D, E 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
C10 H14 N5 O6 P
KHWCHTKSEGGWEX-RRKCRQDMSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B, C, D, E CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.232
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 190.03 α = 90.00
b = 190.03 β = 90.00
c = 119.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-12-04
  • Released Date: 1997-12-24
  • Deposition author(s): Hohenester, E., Pepys, M.B., Wood, S.P.

Revision History

  • 2008-03-24
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance