1LE5

Crystal structure of a NF-kB heterodimer bound to an IFNb-kB

Structural Biology Knowledgebase: 1LE5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.293
  • R-Value Work: 0.260

Literature

Macromolecules
Sequence Display for 1LE5

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 146991.44


Macromolecule Entities
Molecule Chains Length Organism Details
Nuclear factor NF-kappa-B p65 subunit A, E 274 Mus musculus Fragment: p65 RHR
Gene Name(s): Rela Nfkb3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Nuclear factor NF-kappa-B p50 subunit B, F 313 Mus musculus Fragment: p50 RHR
Gene Name(s): Nfkb1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*TP*GP*GP*GP*AP*AP*AP*TP*TP*CP*CP*T)-3' C, G 12 synthetic IFNb-kB DNA
5'-D(*AP*AP*GP*GP*AP*AP*TP*TP*TP*CP*CP*C)-3' D, H 12 synthetic IFNb-kB DNA


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.293
  • R-Value Work: 0.260
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 137.52 α = 90.00
b = 138.01 β = 97.25
c = 89.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-04-09
  • Released Date: 2003-04-15
  • Deposition author(s): Berkowitz, B., Huang, D.B., Chen-Park, F.E., Sigler, P.B., Ghosh, G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4