1LDF

CRYSTAL STRUCTURE OF THE E. COLI GLYCEROL FACILITATOR (GLPF) MUTATION W48F, F200T

Structural Biology Knowledgebase: 1LDF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.230

Literature

Macromolecules
Sequence Display for 1LDF

Classification: TRANSPORT PROTEIN

Total Structure Weight: 30532.46

Macromolecule Entities
Molecule Chains Length Organism Details
Glycerol uptake facilitator protein A 281 Escherichia coli Mutation: W48F, F200T
Gene Name(s): glpF b3927 JW3898
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: Channels: Aquaporins and Glyceroporins

Protein Name: GlpF glycerol facilitator channel


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BOG
Query on BOG

A B-OCTYLGLUCOSIDE
C14 H28 O6
HEGSGKPQLMEBJL-RKQHYHRCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.230
  • Space Group: I 4 2 2

Unit Cell:

Length (Å) Angle (°)
a = 96.93 α = 90.00
b = 96.93 β = 90.00
c = 185.43 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-04-08
  • Released Date: 2002-05-08
  • Deposition author(s): Nollert, P., Miercke, L.J.W., O'Connell, J., Stroud, R.M.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4