1L8T

Crystal Structure Of 3',5"-Aminoglycoside Phosphotransferase Type IIIa ADP Kanamycin A Complex

Structural Biology Knowledgebase: 1L8T SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.234

Literature

Macromolecules
Sequence Display for 1L8T

Classification: TRANSFERASE

Total Structure Weight: 31841.40

Macromolecule Entities
Molecule Chains Length Organism Details
Aminoglycoside 3'-Phosphotransferase A 263 Enterococcus faecalis EC#: 2.7.1.95 IUBMB
Gene Name(s): aphA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
KAN
Query on KAN

A KANAMYCIN A
C18 H36 N4 O11
SBUJHOSQTJFQJX-NOAMYHISSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ADP
Query on ADP

A ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.234
  • Space Group: P 43 2 2

Unit Cell:

Length (Å) Angle (°)
a = 46.63 α = 90.00
b = 46.63 β = 90.00
c = 301.29 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-03-21
  • Released Date: 2002-06-19
  • Deposition author(s): Fong, D.H., Berghuis, A.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4