1L8J

Crystal Structure of the Endothelial Protein C Receptor and Bound Phospholipid Molecule

Structural Biology Knowledgebase: 1L8J SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 1L8J

Classification: BLOOD CLOTTING

Total Structure Weight: 24054.01

Macromolecule Entities
Molecule Chains Length Organism Details
Endothelial protein C receptor A 193 Homo sapiens Fragment: Extracellular domain (residues 18-210)
Gene Name(s): PROCR Gene View EPCR
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PTY
Query on PTY

A PHOSPHATIDYLETHANOLAMINE
C40 H80 N O8 P
NJGIRBISCGPRPF-KXQOOQHDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NDG
Query on NDG

A 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.195
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 69.71 α = 90.00
b = 69.71 β = 90.00
c = 96.21 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-03-20
  • Released Date: 2002-06-26
  • Deposition author(s): Oganesyan, V., Oganesyan, N., Terzyan, S., Dongfeng, Q., Dauter, Z., Esmon, N.L., Esmon, C.T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update