1L5G

CRYSTAL STRUCTURE OF THE EXTRACELLULAR SEGMENT OF INTEGRIN AVB3 IN COMPLEX WITH AN ARG-GLY-ASP LIGAND


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.328
  • R-Value Work: 0.248

Literature

Macromolecules
Sequence Display for 1L5G

Classification: CELL ADHESION

Total Structure Weight: 187559.39

Macromolecule Entities
Molecule Chains Length Organism Details
INTEGRIN ALPHA V A 957 Homo sapiens Fragment: alpha V subunit polypeptide (CD51), Residues 31-987
Gene Name(s): ITGAV Gene View MSK8 VNRA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
INTEGRIN BETA-3 B 692 Homo sapiens Fragment: Beta 3 subunit polypeptide (CD61), Residues 27-718
Gene Name(s): ITGB3 Gene View GP3A
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
CYCLIC ARG-GLY-ASP PEPTIDE C 5 synthetic

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDG
Query on NDG

A, B 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MVA
Query on MVA
C L-PEPTIDE LINKING C6 H13 N O2 VAL

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.328
  • R-Value Work: 0.248
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 129.79 α = 90.00
b = 129.79 β = 90.00
c = 308.78 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-03-06
  • Released Date: 2002-04-17
  • Deposition author(s): Xiong, J.-P., Stehle, T., Zhang, R., Joachimiak, A., Frech, M., Goodman, S.L., Arnaout, M.A.

Revision History

  • 2008-04-28
    Type: Version format compliance
  • 2011-07-13
    Type: Non-polymer description, Version format compliance