1KXG

The 2.0 Ang Resolution Structure of BLyS, B Lymphocyte Stimulator.

Structural Biology Knowledgebase: 1KXG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 1KXG

Classification: CYTOKINE

Total Structure Weight: 104656.00

Macromolecule Entities
Molecule Chains Length Organism Details
B lymphocyte stimulator A, B, C..., D, E, FA, B, C, D, E, F 152 Homo sapiens Fragment: soluble portion (residues 134-285)
Gene Name(s): TNFSF13B Gene View BAFF BLYS TALL1 TNFSF20 ZTNF4 UNQ401/PRO738
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CIT
Query on CIT

A, F CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DIO
Query on DIO

A, B, C, D, E, F 1,4-DIETHYLENE DIOXIDE
C4 H8 O2
RYHBNJHYFVUHQT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, D, F MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.189
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 123.58 α = 90.00
b = 123.58 β = 90.00
c = 161.23 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-01-31
  • Released Date: 2002-03-20
  • Deposition author(s): Oren, D.A., Li, Y., Volovik, Y., Morris, T.S., Dharia, C., Das, K., Galperina, O., Gentz, R., Arnold, E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4