1KW8

Crystal structure of BphC-2,3-dihydroxybiphenyl-NO complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.161

Literature

Macromolecules
Sequence Display for 1KW8

Classification: OXIDOREDUCTASE

Total Structure Weight: 32423.60

Macromolecule Entities
Molecule Chains Length Organism Details
2,3-Dihydroxybiphenyl dioxygenase B 292 Pseudomonas sp. kks102 EC#: 1.13.11.39 IUBMB
Gene Name(s): bphC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BPY
Query on BPY

B BIPHENYL-2,3-DIOL
C12 H10 O2
YKOQAAJBYBTSBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE2
Query on FE2

B FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NO
Query on NO

B NITRIC OXIDE
Nitrogen monoxide (Synonym)
N O
ODUCDPQEXGNKDN-UHFFFAOYAM
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.161
  • Space Group: I 4 2 2

Unit Cell:

Length (Å) Angle (°)
a = 121.72 α = 90.00
b = 121.72 β = 90.00
c = 109.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-01-29
  • Released Date: 2003-01-29
  • Deposition author(s): Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
  • This entry supercedes: 1GDG

Revision History

  • Version 1_0: 2003-01-29

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Source and taxonomy, Version format compliance