1KVH

NCSi-gb-bulge-DNA complex induced formation of a DNA bulge structure by a molecular wedge ligand-post-activated neocarzinostatin chromophore


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 7
  • Conformers Submitted: 7
  • Selection Criteria: All Calculated Structures Submitted

Literature

Macromolecules
Sequence Display for 1KVH

Classification: DNA

Total Structure Weight: 6135.27

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*CP*CP*GP*AP*TP*GP*C)-3' A 8 synthetic
5'-D(*GP*CP*AP*AP*TP*TP*CP*GP*GP*G)-3' B 10 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NCS
Query on NCS

B SPIRO[[7-METHOXY-5-METHYL-1,2-DIHYDRO-NAPHTHALENE]- 3,1'-[5-HYDROXY-9-[2-METHYLAMINO-2,6-DIDEOXYGALACTOPYRANOSYL- OXY]-5-(2-OXO-[1,3]DIOXOLAN-4-YL)-3A,5,9,9A- TETRAHYDRO-3H-1-OXA-CYCLOPENTA[A]-S-INDACEN- 2-ONE]]
C35 H36 N O12
OBDNPHCYNBAIOJ-KDIFMUJMSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 7
  • Conformers Submitted: 7
  • Selection Criteria: all calculated structures submitted

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-01-26
  • Released Date: 2002-06-19
  • Deposition author(s): Gao, X., Stassinopoulos, A., Ji, J., Kwon, Y., Bare, S., Goldberg, I.H.

Revision History

  • Version 1_0: 2002-06-19

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance