1KUJ

Crystal structure of Jacalin complexed with 1-O-methyl-alpha-D-mannose

Structural Biology Knowledgebase: 1KUJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 1KUJ

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 66959.49

Macromolecule Entities
Molecule Chains Length Organism Details
JACALIN ALPHA CHAIN A, C, E, G 133 Artocarpus integer Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
JACALIN BETA CHAIN B, D, F, H 18 Artocarpus integer Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MMA
Query on MMA

A, C, E, G O1-METHYL-MANNOSE
C7 H14 O6
HOVAGTYPODGVJG-VEIUFWFVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.191
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 58.79 α = 90.00
b = 82.61 β = 106.80
c = 63.48 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-01-22
  • Released Date: 2002-06-19
  • Deposition author(s): Bourne, Y., Astoul, C.H., Zamboni, V., Peumans, W.J., Menu-Bouaouiche, L., Van Damme, E.J.M., Barre, A., Rouge, P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4