1KSW

Structure of Human c-Src Tyrosine Kinase (Thr338Gly Mutant) in Complex with N6-benzyl ADP

Structural Biology Knowledgebase: 1KSW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.231

Literature

Macromolecules
Sequence Display for 1KSW

Classification: TRANSFERASE

Total Structure Weight: 52183.38

Macromolecule Entities
Molecule Chains Length Organism Details
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC A 452 Homo sapiens EC#: 2.7.10.2 IUBMB
Fragment: SH3, SH2 and Kinase domains
Mutation: T338G, Y527X
Gene Name(s): SRC Gene View SRC1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NBS
Query on NBS

A N6-BENZYL ADENOSINE-5'-DIPHOSPHATE
C17 H21 N5 O10 P2
MRHGMAGSDAQUFH-LSCFUAHRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PTR
Query on PTR
A L-PEPTIDE LINKING C9 H12 N O6 P TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.231
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 50.81 α = 90.00
b = 87.68 β = 90.00
c = 106.28 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-01-14
  • Released Date: 2002-02-27
  • Deposition author(s): Witucki, L.A., Huang, X., Shah, K., Liu, Y., Kyin, S., Eck, M.J., Shokat, K.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4