1KSB

Relationship of Solution and Protein-Bound Structures of DNA Duplexes with the Major Intrastrand Cross-Link Lesions Formed on Cisplatin Binding to DNA

Structural Biology Knowledgebase: 1KSB SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: --
  • Conformers Submitted: 1
  • Selection Criteria:

Literature

Macromolecules
Sequence Display for 1KSB

Classification: DNA

Total Structure Weight: 5773.70

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*TP*CP*CP*GP*GP*CP*CP*T)-3' A 9 synthetic Cisplatin intrastrand cross-link DNA
5'-D(*AP*GP*GP*CP*CP*GP*GP*AP*G)-3' B 9 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CPT
Query on CPT

A Cisplatin
diammine(dichloro)platinum (Synonym)
Cl2 H6 N2 Pt
LXZZYRPGZAFOLE-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: --
  • Conformers Submitted: 1
  • Selection Criteria: --

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2002-01-11
  • Released Date: 2002-01-17
  • Deposition author(s): Marzilli, L.G., Saad, J.S., Kuklenyik, Z., Keating, K.A., Xu, Y.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update