1KQ9

Human methionine aminopeptidase type II in complex with L-methionine

Structural Biology Knowledgebase: 1KQ9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.178

Literature

Macromolecules
Sequence Display for 1KQ9

Classification: HYDROLASE

Total Structure Weight: 53340.23

Macromolecule Entities
Molecule Chains Length Organism Details
Methionine aminopeptidase 2 A 478 Homo sapiens EC#: 3.4.11.18 IUBMB
Mutation: V347I
Gene Name(s): METAP2 Gene View MNPEP P67EIF2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MET
Query on MET

A METHIONINE
C5 H11 N O2 S
FFEARJCKVFRZRR-BYPYZUCNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TBU
Query on TBU

A TERTIARY-BUTYL ALCOHOL
2-METHYL-2-PROPANOL (Synonym)
C4 H10 O
DKGAVHZHDRPRBM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.178
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 90.07 α = 90.00
b = 98.66 β = 90.00
c = 101.37 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-01-04
  • Released Date: 2003-12-09
  • Deposition author(s): Nonato, M.C., Widom, J., Clardy, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4