1KOL

Crystal structure of formaldehyde dehydrogenase

Structural Biology Knowledgebase: 1KOL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.171

Literature

Macromolecules
Sequence Display for 1KOL

Classification: OXIDOREDUCTASE

Total Structure Weight: 85757.13

Macromolecule Entities
Molecule Chains Length Organism Details
formaldehyde dehydrogenase A, B 398 Pseudomonas putida EC#: 1.2.1.46 IUBMB
Mutation: L139V
Gene Name(s): fdhA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A, B NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.171
  • Space Group: P 31 1 2

Unit Cell:

Length (Å) Angle (°)
a = 85.69 α = 90.00
b = 85.69 β = 90.00
c = 190.75 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-12-21
  • Released Date: 2002-12-11
  • Deposition author(s): Tanaka, N., Kusakabe, Y., Ito, K., Yoshimoto, T., Nakamura, K.T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values