1KNU

LIGAND BINDING DOMAIN OF THE HUMAN PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA IN COMPLEX WITH A SYNTHETIC AGONIST

Structural Biology Knowledgebase: 1KNU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.224

Literature

Macromolecules
Sequence Display for 1KNU

Classification: DNA BINDING PROTEIN

Total Structure Weight: 63046.79

Macromolecule Entities
Molecule Chains Length Organism Details
PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA A, B 274 Homo sapiens Fragment: LIGAND BINDING DOMAIN
Gene Name(s): PPARG Gene View NR1C3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
YPA
Query on YPA

A (S)-3-(4-(2-CARBAZOL-9-YL-ETHOXY)-PHENYL)- 2-ETHOXY-PROPIONIC ACID
C25 H25 N O4
WUZIMDSVRIBNNI-DEOSSOPVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
YPA EC50: 170 nM (100) BindingDB
Kd: 170 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.224
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 92.27 α = 90.00
b = 63.44 β = 101.84
c = 119.24 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-12-19
  • Released Date: 2002-12-19
  • Deposition author(s): Svensson, L.A., Mortensen, S.B., Fleckner, J., Woeldike, H.F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4