1KL1

Crystal Structure of Serine Hydroxymethyltransferase Complexed with Glycine

Structural Biology Knowledgebase: 1KL1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.170

Literature

Macromolecules
Sequence Display for 1KL1

Classification: TRANSFERASE

Total Structure Weight: 46034.43

Macromolecule Entities
Molecule Chains Length Organism Details
Serine Hydroxymethyltransferase A 419 Geobacillus stearothermophilus EC#: 2.1.2.1 IUBMB
Gene Name(s): glyA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLY
Query on GLY

A GLYCINE
C2 H5 N O2
DHMQDGOQFOQNFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.170
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 61.27 α = 90.00
b = 106.40 β = 90.00
c = 56.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-12-11
  • Released Date: 2002-07-10
  • Deposition author(s): Trivedi, V., Gupta, A., Jala, V.R., Saravanan, P., Rao, G.S.J., Rao, N.A., Savithri, H.S., Subramanya, H.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values