1KIZ

D100E trichodiene synthase complexed with pyrophosphate

Structural Biology Knowledgebase: 1KIZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 1KIZ

Classification: LYASE

Total Structure Weight: 88602.98

Macromolecule Entities
Molecule Chains Length Organism Details
trichodiene synthase A, B 374 Fusarium sporotrichioides EC#: 4.2.3.6 IUBMB
Mutation: D100E
Gene Name(s): TRI5 TOX 5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
POP
Query on POP

B PYROPHOSPHATE 2-
H2 O7 P2
XPPKVPWEQAFLFU-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.219
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 122.72 α = 90.00
b = 122.72 β = 90.00
c = 151.01 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-12-03
  • Released Date: 2002-03-13
  • Deposition author(s): Rynkiewicz, M.J., Cane, D.E., Christianson, D.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4