1KHT

Adenylate kinase from Methanococcus voltae

Structural Biology Knowledgebase: 1KHT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.220

Literature

Macromolecules
Sequence Display for 1KHT

Classification: SIGNALING PROTEIN TRANSFERASE

Total Structure Weight: 64683.34

Macromolecule Entities
Molecule Chains Length Organism Details
adenylate kinase A, B, C 192 Methanococcus voltae EC#: 2.7.4.3 IUBMB
Gene Name(s): adkA adk
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMP
Query on AMP

B, C ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.220
  • Space Group: I 2 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 200.50 α = 90.00
b = 200.50 β = 90.00
c = 200.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-11-30
  • Released Date: 2003-06-03
  • Deposition author(s): Criswell, A.R., Konisky, J., Phillips Jr., G.N.

Revision History

  • 2016-09-28
    Type: Other | Details: matthew coeff
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4