1KE7

CYCLIN-DEPENDENT KINASE 2 (CDK2) COMPLEXED WITH 3-{[(2,2-DIOXIDO-1,3-DIHYDRO-2-BENZOTHIEN-5-YL)AMINO]METHYLENE}-5-(1,3-OXAZOL-5-YL)-1,3-DIHYDRO-2H-INDOL-2-ONE

Structural Biology Knowledgebase: 1KE7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 1KE7

Classification: TRANSFERASE

Total Structure Weight: 34370.23

Macromolecule Entities
Molecule Chains Length Organism Details
Cell division protein kinase 2 A 298 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LS3
Query on LS3

A 3-{[(2,2-DIOXIDO-1,3-DIHYDRO-2-BENZOTHIEN- 5-YL)AMINO]METHYLENE}-5-(1,3-OXAZOL-5-YL)- 1,3-DIHYDRO-2H-INDOL-2-ONE
C20 H15 N3 O4 S
FTQYGMLRLRXBPT-IDUWFGFVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
LS3 N/A in BindingDB
IC50: 8.9 nM  BindingMOAD
IC50: 8.9 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.191
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 72.76 α = 90.00
b = 73.78 β = 90.00
c = 54.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-11-14
  • Released Date: 2002-05-14
  • Deposition author(s): Bramson, H.N., Corona, J., Davis, S.T., Dickerson, S.H., Edelstein, M., Frye, S.V., Gampe, R.T., Hassell, A.H., Shewchuk, L.M., Kuyper, L.F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4