1KCF

Crystal Structure of the Yeast Mitochondrial Holliday Junction Resolvase, Ydc2

Structural Biology Knowledgebase: 1KCF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.238

Literature

Macromolecules
Sequence Display for 1KCF

Classification: HYDROLASE

Total Structure Weight: 60688.17

Macromolecule Entities
Molecule Chains Length Organism Details
HYPOTHETICAL 30.2 KD PROTEIN C25G10.02 IN CHROMOSOME I A, B 258 Schizosaccharomyces pombe EC#: 3.1 IUBMB
Gene Name(s): cce1 ydc2 SPAC25G10.02
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.238
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 72.00 α = 90.00
b = 133.94 β = 90.00
c = 73.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-11-08
  • Released Date: 2001-11-28
  • Deposition author(s): Ceschini, S., Keeley, A., McAlister, M.S.B., Oram, M., Phelan, J., Pearl, L.H., Tsaneva, I.R., Barrett, T.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4