1KBV

NITRITE-SOAKED CRYSTAL STRUCTURE OF THE SOLUBLE DOMAIN OF ANIA FROM NEISSERIA GONORRHOEAE

Structural Biology Knowledgebase: 1KBV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 1KBV

Classification: OXIDOREDUCTASE

Total Structure Weight: 212317.02

Macromolecule Entities
Molecule Chains Length Organism Details
Major outer membrane protein PAN 1 A, B, C..., D, E, FA, B, C, D, E, F 327 Neisseria gonorrhoeae EC#: 1.7.2.1 IUBMB
Fragment: Residues 42-364, soluble domain
Mutation: S209A, I210L, A211T, S283N
Gene Name(s): aniA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CU
Query on CU

A, B, C, D, E, F COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NO2
Query on NO2

A, C, D, E, F NITRITE ION
N O2
IOVCWXUNBOPUCH-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.195
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 65.29 α = 83.89
b = 98.10 β = 74.14
c = 102.30 γ = 73.32

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-11-06
  • Released Date: 2001-12-05
  • Deposition author(s): Boulanger, M.J., Murphy, M.E.P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4