1K5W

THREE-DIMENSIONAL STRUCTURE OF THE SYNAPTOTAGMIN 1 C2B-DOMAIN: SYNAPTOTAGMIN 1 AS A PHOSPHOLIPID BINDING MACHINE

Structural Biology Knowledgebase: 1K5W SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 500
  • Conformers Submitted: 20
  • Selection Criteria: Structures with the Minimum Noe Energy

Literature

Macromolecules
Sequence Display for 1K5W

Classification: ENDOCYTOSIS / EXOCYTOSIS

Total Structure Weight: 17432.51

Macromolecule Entities
Molecule Chains Length Organism Details
Synaptotagmin I A 152 Rattus norvegicus EC#: 2.6.1.22 IUBMB
Fragment: Residues 270-421, C2B-Domain
Gene Name(s): Syt1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 500
  • Conformers Submitted: 20
  • Selection Criteria: STRUCTURES WITH THE MINIMUM NOE ENERGY

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-10-12
  • Released Date: 2002-01-23
  • Deposition author(s): Fernandez, I., Arac, D., Ubach, J., Gerber, S.H., Shin, O., Gao, Y., Anderson, R.G.W., Sudhof, T.C., Rizo, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4