1K5N

HLA-B*2709 BOUND TO NONA-PEPTIDE M9

Structural Biology Knowledgebase: 1K5N SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.09 Å
  • R-Value Free: 0.148
  • R-Value Work: 0.123

Literature

Macromolecules
Sequence Display for 1K5N

Classification: IMMUNE SYSTEM

Total Structure Weight: 44921.25

Macromolecule Entities
Molecule Chains Length Organism Details
major histocompatibility complex molecule HLA-B*2709 A 276 Homo sapiens Fragment: HLA-B*2709 heavy chain, extracellular domain
Gene Name(s): HLA-B Gene View HLAB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
beta-2-microglobulin, light chain B 100 Homo sapiens Gene Name(s): B2M Gene View CDABP0092 HDCMA22P
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
nonameric model peptide m9 C 9 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.09 Å
  • R-Value Free: 0.148
  • R-Value Work: 0.123
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 50.85 α = 90.00
b = 82.48 β = 90.00
c = 110.71 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-10-11
  • Released Date: 2002-10-30
  • Deposition author(s): Hulsmeyer, M., Hillig, R.C., Volz, A., Ruhl, M., Schroder, W., Saenger, W., Ziegler, A., Uchanska-Ziegler, B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update