1K5C

Endopolygalacturonase I from Stereum purpureum at 0.96 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.96 Å
  • R-Value Free: 0.140
  • R-Value Work: 0.114

Literature

Macromolecules
Sequence Display for 1K5C

Classification: HYDROLASE

Total Structure Weight: 35314.42

Macromolecule Entities
Molecule Chains Length Organism Details
ENDOPOLYGALACTURONASE A 335 Chondrostereum purpureum EC#: 3.2.1.15 IUBMB
Fragment: residues 1-335
Gene Name(s): cppg1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.96 Å
  • R-Value Free: 0.140
  • R-Value Work: 0.114
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 46.40 α = 72.50
b = 52.02 β = 68.93
c = 37.34 γ = 69.24

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-10-10
  • Released Date: 2002-06-05
  • Deposition author(s): Shimizu, T., Nakatsu, T., Miyairi, K., Okuno, T., Kato, H.

Revision History

  • Version 1_0: 2002-06-05

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Non-polymer description, Version format compliance