1JZS

Isoleucyl-tRNA synthetase Complexed with mupirocin

Structural Biology Knowledgebase: 1JZS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.249

Literature

Macromolecules
Sequence Display for 1JZS

Classification: LIGASE

Total Structure Weight: 95314.16

Macromolecule Entities
Molecule Chains Length Organism Details
Isoleucyl-tRNA synthetase A 821 Thermus thermophilus EC#: 6.1.1.5 IUBMB
Gene Name(s): ileS TTHA1067
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MRC
Query on MRC

A MUPIROCIN
PSEUDOMONIC ACID (Synonym)
C26 H44 O9
MINDHVHHQZYEEK-DWJPPWIMSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
MRC N/A in BindingDB
Ki: 250 nM  BindingMOAD
Ki: 250 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.249
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 160.64 α = 90.00
b = 94.58 β = 126.30
c = 125.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-09-17
  • Released Date: 2001-12-21
  • Deposition author(s): Nakama, T., Nureki, O., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4