1JYB

Crystal structure of Rubrerythrin

Structural Biology Knowledgebase: 1JYB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 1JYB

Classification: ELECTRON TRANSPORT

Total Structure Weight: 21754.54

Macromolecule Entities
Molecule Chains Length Organism Details
Rubrerythrin A 191 Desulfovibrio vulgaris Gene Name(s): rbr DVU_3094
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

A FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.182
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 49.67 α = 90.00
b = 81.55 β = 90.00
c = 99.75 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-09-11
  • Released Date: 2002-09-11
  • Deposition author(s): Chang, W.R., Li, M., Liu, M.Y.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4