1JX6

CRYSTAL STRUCTURE OF LUXP FROM VIBRIO HARVEYI COMPLEXED WITH AUTOINDUCER-2

Structural Biology Knowledgebase: 1JX6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 1JX6

Classification: SIGNALING PROTEIN

Total Structure Weight: 39299.16

Macromolecule Entities
Molecule Chains Length Organism Details
LUXP PROTEIN A 342 Vibrio harveyi Gene Name(s): luxP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AI2
Query on AI2

A 3A-METHYL-5,6-DIHYDRO-FURO[2,3-D][1,3,2]DIOXABOROLE- 2,2,6,6A-TETRAOL
3R, (Synonym)
C5 H10 B O7
ACKRRKSNOOISSG-VPENINKCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.214
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 44.27 α = 90.00
b = 77.47 β = 96.37
c = 52.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-09-05
  • Released Date: 2002-02-04
  • Deposition author(s): Chen, X., Schauder, S., Potier, N., Van Dorsselaer, A., Pelczer, I., BassleR, B.L., Hughson, F.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4