1JVA

CRYSTAL STRUCTURE OF THE VMA1-DERIVED ENDONUCLEASE BEARING THE N AND C EXTEIN PROPEPTIDES

Structural Biology Knowledgebase: 1JVA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 1JVA

Classification: HYDROLASE

Total Structure Weight: 106301.47

Macromolecule Entities
Molecule Chains Length Organism Details
VMA1-DERIVED HOMING ENDONUCLEASE X10SSS A, B 475 Saccharomyces cerevisiae EC#: 3.6.3.14 IUBMB
Fragment: RESIDUES 274-747
Mutation: C284S, H362N, N737S, C738S
Gene Name(s): VMA1 CLS8 TFP1 YDL185W D1286
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.198
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 66.18 α = 103.10
b = 68.85 β = 98.79
c = 58.52 γ = 78.98

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-29
  • Released Date: 2002-08-29
  • Deposition author(s): Mizutani, R., Satow, Y.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4