1JSI

CRYSTAL STRUCTURE OF H9 HAEMAGGLUTININ BOUND TO LSTC RECEPTOR ANALOG

Structural Biology Knowledgebase: 1JSI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 1JSI

Classification: Viral protein

Total Structure Weight: 58616.60

Macromolecule Entities
Molecule Chains Length Organism Details
HAEMAGGLUTININ (HA1 CHAIN) A 319 Influenza a virus Fragment: Residues 1-319
Details: AUTO CLEAVED FRAGMENT OF N-TERMINUS
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HAEMAGGLUTININ (HA2 CHAIN) B 176 Influenza a virus Fragment: Residues 1-176
Details: AUTO CLEAVED FRAGMENT OF C-TERMINUS
Gene Name(s):

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SIA
Query on SIA

A O-SIALIC ACID
C11 H19 N O9
SQVRNKJHWKZAKO-YRMXFSIDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLC
Query on GLC

A ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GAL
Query on GAL

A BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.202
  • Space Group: P 63

Unit Cell:

Length (Å) Angle (°)
a = 108.58 α = 90.00
b = 108.58 β = 90.00
c = 149.41 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-17
  • Released Date: 2001-09-26
  • Deposition author(s): Ha, Y., Stevens, D.J., Skehel, J.J., Wiley, D.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update