1JRK

Crystal Structure of a Nudix Protein from Pyrobaculum aerophilum Reveals a Dimer with Intertwined Beta Sheets

Structural Biology Knowledgebase: 1JRK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 1JRK

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 71964.01

Macromolecule Entities
Molecule Chains Length Organism Details
Nudix homolog A, B, C, D 156 Pyrobaculum aerophilum Gene Name(s): PAE3301
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

A, B, C (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.190
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 52.47 α = 90.00
b = 81.46 β = 99.96
c = 73.89 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-13
  • Released Date: 2002-04-03
  • Deposition author(s): Wang, S., Mura, C., Sawaya, M.R., Cascio, D., Eisenberg, D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4