1JQ5

Bacillus Stearothermophilus Glycerol dehydrogenase complex with NAD+


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.151

Literature

Macromolecules
Sequence Display for 1JQ5

Classification: OXIDOREDUCTASE

Total Structure Weight: 40359.24

Macromolecule Entities
Molecule Chains Length Organism Details
Glycerol dehydrogenase A 370 Geobacillus stearothermophilus EC#: 1.1.1.6 IUBMB
Mutation: S305C
Gene Name(s): gldA gld
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.151
  • Space Group: I 4 2 2

Unit Cell:

Length (Å) Angle (°)
a = 104.66 α = 90.00
b = 104.66 β = 90.00
c = 148.51 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-03
  • Released Date: 2001-10-01
  • Deposition author(s): Ruzheinikov, S.N., Burke, J., Sedelnikova, S., Baker, P.J., Taylor, R., Bullough, P.A., Muir, N.M., Gore, M.G., Rice, D.W.

Revision History

  • Version 1_0: 2001-10-01

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Atomic model, Derived calculations, Version format compliance

  • Version 1_3: 2011-11-16

    Type: Atomic model