1JPU

Crystal Structure of Bacillus Stearothermophilus Glycerol Dehydrogenase

Structural Biology Knowledgebase: 1JPU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.163

Literature

Macromolecules
Sequence Display for 1JPU

Classification: OXIDOREDUCTASE

Total Structure Weight: 39696.16

Macromolecule Entities
Molecule Chains Length Organism Details
glycerol dehydrogenase A 370 Geobacillus stearothermophilus EC#: 1.1.1.6 IUBMB
Mutation: S305C
Gene Name(s): gldA gld
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.163
  • Space Group: I 4 2 2

Unit Cell:

Length (Å) Angle (°)
a = 105.03 α = 90.00
b = 105.03 β = 90.00
c = 148.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-03
  • Released Date: 2001-10-03
  • Deposition author(s): Ruzheinikov, S.N., Burke, J., Sedelnikova, S., Baker, P.J., Taylor, R., Bullough, P.A., Muir, N.M., Gore, M.G., Rice, D.W.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4