1JPG

Crystal Structure Of The LCMV Peptidic Epitope Np396 In Complex With The Murine Class I Mhc Molecule H-2Db

Structural Biology Knowledgebase: 1JPG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.228

Literature

Macromolecules
Sequence Display for 1JPG

Classification: IMMUNE SYSTEM

Total Structure Weight: 45515.43

Macromolecule Entities
Molecule Chains Length Organism Details
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN A 281 Mus musculus Fragment: extracellular domains
Gene Name(s): H2-D1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
BETA-2-MICROGLOBULIN B 100 Mus musculus Gene Name(s): B2m
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
LCMV peptidic epitope np396 C 9 synthetic


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.228
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 91.12 α = 90.00
b = 109.95 β = 122.88
c = 57.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-02
  • Released Date: 2001-10-24
  • Deposition author(s): Ciatto, C., Tissot, A.C., Tschopp, M., Capitani, G., Pecorari, F., Pluckthun, A., Grutter, M.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4