1JPC

MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM SNOWDROP (GALANTHUS NIVALIS) BULBS IN COMPLEX WITH MANNOSE-ALPHA1,6-(MANNOSE-ALPHA1,3)-MANNOSE-ALPHA1,6-(MANNOSE-ALPHA1,3)-MANNOSE

Structural Biology Knowledgebase: 1JPC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.187

Literature

Macromolecules
Sequence Display for 1JPC

Classification: LECTIN

Total Structure Weight: 13412.62

Macromolecule Entities
Molecule Chains Length Organism Details
AGGLUTININ A 109 Galanthus nivalis Details: FROM GALANTHUS NIVALIS PLANT FAMILY OF AMARYLLIDACEAE
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MAN
Query on MAN

A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.187
  • Space Group: I 41 2 2

Unit Cell:

Length (Å) Angle (°)
a = 96.34 α = 90.00
b = 96.34 β = 90.00
c = 68.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-07-30
  • Released Date: 1997-01-27
  • Deposition author(s): Wright, C.S., Hester, G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values