1JP6

Sperm Whale met-Myoglobin (room temperature; room pressure)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.162

Literature

Macromolecules
Sequence Display for 1JP6

Classification: OXYGEN STORAGE / TRANSPORT

Total Structure Weight: 18043.56

Macromolecule Entities
Molecule Chains Length Organism Details
myoglobin A 153 Physeter catodon Gene Name(s): MB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.162
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 64.45 α = 90.00
b = 30.93 β = 105.73
c = 34.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-01
  • Released Date: 2002-01-16
  • Deposition author(s): Urayama, P., Gruner, S.M., Phillips Jr., G.N.

Revision History

  • Version 1_0: 2002-01-16

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance