1JP3

Structure of E.coli undecaprenyl pyrophosphate synthase

Structural Biology Knowledgebase: 1JP3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 1JP3

Classification: TRANSFERASE

Total Structure Weight: 57940.70

Macromolecule Entities
Molecule Chains Length Organism Details
undecaprenyl pyrophosphate synthase A, B 253 Escherichia coli EC#: 2.5.1.31 IUBMB
Mutation: M25M, M86M, M176M, M183M
Gene Name(s): ispU rth uppS yaeS b0174 JW0169
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EGC
Query on EGC

A 2-(2-{2-[2-(2-{2-[2-(2-{2-[4-(1,1,3,3-TETRAMETHYL- BUTYL)-PHENOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}- ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL
TRITON X-100 (Synonym)
C32 H58 O10
VJYAJQFKKLYARJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.194
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 64.18 α = 90.00
b = 67.33 β = 90.00
c = 110.14 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-31
  • Released Date: 2001-08-15
  • Deposition author(s): Ko, T.P., Chen, Y.K., Robinson, H., Tsai, P.C., Gao, Y.G., Chen, A.P.C., Wang, A.H.J., Liang, P.H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4