1JOA

NADH PEROXIDASE WITH CYSTEINE-SULFENIC ACID

Structural Biology Knowledgebase: 1JOA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 1JOA

Classification: OXIDOREDUCTASE

Total Structure Weight: 50405.34

Macromolecule Entities
Molecule Chains Length Organism Details
NADH PEROXIDASE A 447 Enterococcus faecalis EC#: 1.11.1.1 IUBMB
Mutation: C42X
Details: ACTIVE, NATIVE FORM WITH CYSTEINE-SULFENIC ACID
Gene Name(s): npr EF_1211
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSO
Query on CSO
A L-PEPTIDE LINKING C3 H7 N O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.179
  • Space Group: I 41 2 2

Unit Cell:

Length (Å) Angle (°)
a = 153.73 α = 90.00
b = 153.73 β = 90.00
c = 189.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-07-02
  • Released Date: 1997-01-11
  • Deposition author(s): Yeh, J.I., Claiborne, A.C., Hol, W.G.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values