1JO2

Crystal Structure of the B-DNA Hexamer (CgATCG).Daunomycin Complex Containing a Ribose at the Intercalation Site

Structural Biology Knowledgebase: 1JO2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 1JO2

Classification: DNA RNA

Total Structure Weight: 2352.76

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*C)-R(P*G)-D(P*AP*TP*CP*G)-3' A 6 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DM1
Query on DM1

A DAUNOMYCIN
DAUNORUBICIN (Synonym)
C27 H29 N O10
STQGQHZAVUOBTE-VGBVRHCVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.198
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 28.05 α = 90.00
b = 28.05 β = 90.00
c = 53.16 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2001-07-26
  • Released Date: 2003-07-29
  • Deposition author(s): Shi, K., Pan, B., Sundaralingam, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4