1JML

Conversion of Monomeric Protein L to an Obligate Dimer by Computational Protein Design

Structural Biology Knowledgebase: 1JML SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 1JML

Classification: PROTEIN BINDING

Total Structure Weight: 8259.21

Macromolecule Entities
Molecule Chains Length Organism Details
Protein L A 72 Finegoldia magna Fragment: B1 DOMAIN
Mutation: Y47W, A52V, D53P, G55A
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.193
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 46.76 α = 90.00
b = 76.74 β = 90.00
c = 59.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-19
  • Released Date: 2001-10-10
  • Deposition author(s): O'Neill, J.W., Kuhlman, B, Kim, D.E., Zhang, K.Y.J., Baker, D.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4